FastQCFastQC Report
Mon 6 Jun 2016
ERR1378381.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378381.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1139489
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGTAT300.005148147729.99891944
CGCGCCC706.9871783E-419.2841711
GCGCCCG851.20516794E-418.52793112
CGCCCGG1257.631839E-616.19870413
ATCTTCG1156.774339E-515.6543585
CTTCGTA1156.77688E-515.653677
CGTTGGA1806.859227E-815.0020925
TCGTTGG1859.574251E-814.5991934
CTTCGTT1705.8636397E-714.564052
TTCGTAT1251.3813742E-414.3988498
TCGTATA1251.3813742E-414.3988499
CCTTCGT1604.9937807E-614.0712551
CCCGCCA1000.00753524613.5042533
GGCGTGT1000.0075549613.4989211
CGTATAA1352.653709E-413.33226710
TTCGTTG2155.9715967E-712.5620963
TGAGCCG2054.827636E-612.07273545
GGAAACG2452.2409222E-711.9378219
CCGGCTA1350.004009442411.66573316
CGTGAGC1558.4480346E-411.6201331
Produced by FastQC (version 0.11.5)