FastQCFastQC Report
Mon 6 Jun 2016
ERR1378380.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378380.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences837456
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCCGT250.002106974835.99933245
CGCTTAA708.1308826E-1032.14225832
CCGCTTA751.7025741E-929.99944131
CGTATGC903.947207E-1027.49948944
CTCGTAT903.947207E-1027.49948942
ACCGCTT856.4774213E-926.47009530
GACCGCT901.1903467E-824.99953729
GCGGTTC1001.3442332E-924.749548
TCTCGTA1001.3442332E-924.7495441
GAGCGGT1101.5097612E-1024.5464656
TCGTATG1052.3646862E-923.5709943
AAGAGCG1104.0472514E-922.5009254
ATCTCGT1201.1035809E-820.62584740
CGTATAA807.5609496E-519.68713410
AGCGGTT1403.081368E-919.2865077
CACGTGC706.979373E-419.2865071
AGAGCGG1403.081368E-919.2865075
TTCGTAT851.2041173E-418.5290668
TCGTATA851.2041173E-418.5290669
CGGTTCA1354.2689862E-818.3329939
Produced by FastQC (version 0.11.5)