FastQCFastQC Report
Mon 6 Jun 2016
ERR1378379.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378379.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1095507
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGACAG1002.0468859E-517.99959830
GGCGACA1053.1128027E-517.14247529
CGACAGA1205.1737516E-616.87462431
GGGCGAC1056.0375605E-414.99966528
CTTCGTT1504.2637213E-513.5021642
CGTGAGC2003.6458605E-612.3798081
CCTTCGT1506.427518E-412.0046631
CCGGGCG1902.9353261E-511.8467061
CGAGGTC1558.493373E-411.61264512
CGGGCGC2004.9674338E-511.2518032
GGCGGAG2452.896073E-611.02016231
ACGAGGT1700.00183766610.58799811
TCACGAG1500.00877809210.4997669
GTTAGCC1500.00877809210.49976613
CGCCACC1850.0037047289.7299575
AGAATCG2109.7065035E-49.6430835
GAGCCGA2109.7105623E-49.64264240
GGGCGCG1900.0046137459.474773
AGGCGGA2851.7555214E-59.47347330
GCCACCA7850.09.4588196
Produced by FastQC (version 0.11.5)