FastQCFastQC Report
Mon 6 Jun 2016
ERR1378378.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378378.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1145597
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGCCA600.006511979718.74925218
GAATCGC1806.874325E-814.99940312
GTCAACC900.003754904514.99940335
CCTTCGT1453.091486E-513.9716691
GATCACG1504.2720785E-513.49946413
TCGCTTG2002.4911606E-713.49946315
AGAATCG2002.4911606E-713.49946311
TCACGAG1200.001656898313.12447715
AATCGCT2104.5084926E-712.85663113
CGGGGTT1952.7447786E-612.69791
CGTTGGA1607.8153644E-512.6574045
TCGTTGG1801.6886248E-512.5033234
ATCGCTT2401.7131606E-712.18701514
CGGGATT1300.003022389312.114902514
CGTGTTA1300.003022389312.114902510
AGTGGCG1600.001108255611.24955210
CGCTTGA2402.2617933E-611.24955216
CTCACGC3256.0990715E-911.07648314
TCGATCT1853.0228336E-410.9455111
GCGATCT1650.001433151210.90865816
Produced by FastQC (version 0.11.5)