FastQCFastQC Report
Mon 6 Jun 2016
ERR1378377.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378377.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1230235
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGTTC551.3688831E-424.5438588
TCGTATG602.467375E-422.50036643
GAGCGGT702.7037024E-522.4994536
TCTCGTA754.6023935E-521.00034141
CGTATGC706.9830887E-419.28602844
AGCGAAG600.006508613518.75106638
CTCGTAT1053.1122763E-517.14313542
CGGTTCA800.001711682316.8739019
AGCGGTT800.001711682316.8739017
AAGAGCG850.00256502515.882614
ATCTCGT1056.0346816E-415.00085440
AGAGCGG900.003754730314.9996355
GCATCCG950.00537861714.20960216
GAATCGC1607.8277095E-512.65542712
AGAATCG1852.2447455E-512.1613711
TACTCGG2106.313763E-611.78590633
CGGGCAT1350.004000789511.6692291
ATGCCGA1558.491926E-411.61309222
CTACTCG2004.975882E-511.25018332
ACCGCGC1802.3457788E-411.2492699