Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378377.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1230235 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGGTTC | 55 | 1.3688831E-4 | 24.543858 | 8 |
TCGTATG | 60 | 2.467375E-4 | 22.500366 | 43 |
GAGCGGT | 70 | 2.7037024E-5 | 22.499453 | 6 |
TCTCGTA | 75 | 4.6023935E-5 | 21.000341 | 41 |
CGTATGC | 70 | 6.9830887E-4 | 19.286028 | 44 |
AGCGAAG | 60 | 0.0065086135 | 18.751066 | 38 |
CTCGTAT | 105 | 3.1122763E-5 | 17.143135 | 42 |
CGGTTCA | 80 | 0.0017116823 | 16.873901 | 9 |
AGCGGTT | 80 | 0.0017116823 | 16.873901 | 7 |
AAGAGCG | 85 | 0.002565025 | 15.88261 | 4 |
ATCTCGT | 105 | 6.0346816E-4 | 15.000854 | 40 |
AGAGCGG | 90 | 0.0037547303 | 14.999635 | 5 |
GCATCCG | 95 | 0.005378617 | 14.209602 | 16 |
GAATCGC | 160 | 7.8277095E-5 | 12.655427 | 12 |
AGAATCG | 185 | 2.2447455E-5 | 12.16137 | 11 |
TACTCGG | 210 | 6.313763E-6 | 11.785906 | 33 |
CGGGCAT | 135 | 0.0040007895 | 11.669229 | 1 |
ATGCCGA | 155 | 8.491926E-4 | 11.613092 | 22 |
CTACTCG | 200 | 4.975882E-5 | 11.250183 | 32 |
ACCGCGC | 180 | 2.3457788E-4 | 11.249269 | 9 |