FastQCFastQC Report
Mon 6 Jun 2016
ERR1378376.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378376.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1493564
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGATCT300.00514855229.99903923
GAGCGGT600.00650881618.7512846
CGTCTGG900.003755421614.9995210
GCGACAG1150.001202363513.69521330
ATGCCCG1000.00755400613.49956812
TCACGTA1200.001657211113.12457913
CCTTCGT1651.04003004E-412.2768561
CCGGCTA2207.9268284E-712.27233516
CACCACG3451.05501385E-1011.7391478
ACGATCT1558.497233E-411.61253116
TGGGCGA1558.497233E-411.61253127
CCCGCCA2158.1940525E-611.5135733
CCGCCAC2158.197107E-611.5131874
CGGCTAA2158.212386E-611.5112617
GAATCGC2402.2603617E-611.2507716
GAGCCGA2201.0598951E-511.25001740
TCGTTGG2108.165704E-510.7157374
CTTCGTT1903.862334E-410.6596952
CCGAGAT2352.200122E-510.53193143
CGCCACC2801.2564051E-610.4471445
Produced by FastQC (version 0.11.5)