Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378372.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 634768 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3715 | 0.5852531948680463 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGGACATATCTCGTATGCCGTC | 2779 | 0.4377977465782774 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGGACATATCTCGTATGCC | 2369 | 0.3732072190154513 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 370 | 0.0 | 38.305847 | 43 |
ATGCCGT | 380 | 0.0 | 37.2978 | 44 |
CCGTTCG | 25 | 0.0021077392 | 35.995335 | 28 |
TGCCGTC | 395 | 0.0 | 35.881424 | 45 |
ATCGGAA | 490 | 0.0 | 30.761318 | 27 |
TCGGAAG | 500 | 0.0 | 30.596037 | 28 |
AGATCGG | 495 | 0.0 | 30.450602 | 25 |
TTACGAA | 30 | 0.0051488033 | 29.996113 | 36 |
GATCGGA | 505 | 0.0 | 29.847618 | 26 |
GAGATCG | 560 | 0.0 | 27.31789 | 24 |
CGAGATC | 580 | 0.0 | 26.375893 | 23 |
CCGAGAT | 585 | 0.0 | 26.15046 | 22 |
TGCCGAG | 1175 | 0.0 | 25.464785 | 20 |
AATGCCG | 1200 | 0.0 | 25.309221 | 18 |
ATGCCGA | 1195 | 0.0 | 25.226858 | 19 |
GCCGAGA | 1255 | 0.0 | 23.662273 | 21 |
GAATGCC | 1260 | 0.0 | 23.568375 | 17 |
TATCTCG | 605 | 0.0 | 23.054863 | 36 |
CCGGGAC | 635 | 0.0 | 22.674227 | 28 |
CGGGACA | 635 | 0.0 | 22.674227 | 29 |