FastQCFastQC Report
Mon 6 Jun 2016
ERR1378372.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378372.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences634768
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT37150.5852531948680463Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGGACATATCTCGTATGCCGTC27790.4377977465782774Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGGACATATCTCGTATGCC23690.3732072190154513Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3700.038.30584743
ATGCCGT3800.037.297844
CCGTTCG250.002107739235.99533528
TGCCGTC3950.035.88142445
ATCGGAA4900.030.76131827
TCGGAAG5000.030.59603728
AGATCGG4950.030.45060225
TTACGAA300.005148803329.99611336
GATCGGA5050.029.84761826
GAGATCG5600.027.3178924
CGAGATC5800.026.37589323
CCGAGAT5850.026.1504622
TGCCGAG11750.025.46478520
AATGCCG12000.025.30922118
ATGCCGA11950.025.22685819
GCCGAGA12550.023.66227321
GAATGCC12600.023.56837517
TATCTCG6050.023.05486336
CCGGGAC6350.022.67422728
CGGGACA6350.022.67422729