Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378366.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 931757 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAAGATCTCGTATGCC | 3124 | 0.3352805506156648 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 2776 | 0.2979317568851106 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAAGATCTCGTATGCCGTC | 2138 | 0.22945896837909455 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 265 | 0.0 | 37.354256 | 43 |
TGCCGTC | 285 | 0.0 | 34.732906 | 45 |
ATGCCGT | 290 | 0.0 | 34.134064 | 44 |
AGATCGG | 460 | 0.0 | 33.257103 | 25 |
ATCGGAA | 475 | 0.0 | 32.680508 | 27 |
TCGGAAG | 515 | 0.0 | 31.889593 | 28 |
GATCGGA | 490 | 0.0 | 31.680084 | 26 |
CGAGATC | 540 | 0.0 | 28.746744 | 23 |
CCGAGAT | 560 | 0.0 | 27.720072 | 22 |
GAGATCG | 580 | 0.0 | 26.764208 | 24 |
AGACCGT | 655 | 0.0 | 25.073494 | 28 |
CGTATGC | 660 | 0.0 | 24.883543 | 44 |
CTCGTAT | 660 | 0.0 | 24.883543 | 42 |
TCTCGTA | 660 | 0.0 | 24.883543 | 41 |
GACCGTG | 665 | 0.0 | 24.69645 | 29 |
GAGACCG | 665 | 0.0 | 24.69645 | 27 |
CCGTGCA | 690 | 0.0 | 24.453753 | 31 |
CGTGCAA | 680 | 0.0 | 24.151676 | 32 |
TCGTATG | 680 | 0.0 | 24.151676 | 43 |
GTATGCC | 690 | 0.0 | 24.127703 | 45 |