FastQCFastQC Report
Mon 6 Jun 2016
ERR1378366.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378366.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences931757
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAAGATCTCGTATGCC31240.3352805506156648Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT27760.2979317568851106Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAAGATCTCGTATGCCGTC21380.22945896837909455Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2650.037.35425643
TGCCGTC2850.034.73290645
ATGCCGT2900.034.13406444
AGATCGG4600.033.25710325
ATCGGAA4750.032.68050827
TCGGAAG5150.031.88959328
GATCGGA4900.031.68008426
CGAGATC5400.028.74674423
CCGAGAT5600.027.72007222
GAGATCG5800.026.76420824
AGACCGT6550.025.07349428
CGTATGC6600.024.88354344
CTCGTAT6600.024.88354342
TCTCGTA6600.024.88354341
GACCGTG6650.024.6964529
GAGACCG6650.024.6964527
CCGTGCA6900.024.45375331
CGTGCAA6800.024.15167632
TCGTATG6800.024.15167643
GTATGCC6900.024.12770345