FastQCFastQC Report
Mon 6 Jun 2016
ERR1378356.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378356.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences904279
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT28940.32003397181622045Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCGTTATCTCGTATGCC27700.30632138974807555Illumina Paired End PCR Primer 2 (97% over 36bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGATCGTTATCTCGTATGCCGTC24240.2680588623643809Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2600.040.6672343
ATGCCGT2700.039.16103744
TGCCGTC3100.034.833745
TCTCGAC401.5617368E-533.74514821
GATCGGA4250.032.28947426
TCGGAAG4150.031.9833528
AGATCGG4550.030.160525
ATCGGAA4550.029.66606527
CCGAGAT5150.027.52031522
AATGCCG9150.027.04529418
ATGCCGA9350.026.94799619
TGCCGAG9450.026.1867120
GAGATCG5400.025.82961824
CGAGATC5950.023.82010523
GCCGAGA10850.022.60043721
GAATGCC11050.022.1913817
AGCGCTC654.241382E-420.7662437
CTCGTAT5150.020.53102939
TCTCGTA5150.020.53102938
GAGCGGT12350.020.4256423