Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378351.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 562269 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4698 | 0.835543129711935 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGCTAATCTCGTATGCC | 4129 | 0.7343460158749638 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGCTAATCTCGTATGCCGTC | 3743 | 0.6656956012157882 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 686 | 0.122005659212939 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 480 | 0.0 | 41.7157 | 43 |
TGCCGTC | 475 | 0.0 | 41.681164 | 45 |
ATGCCGT | 480 | 0.0 | 41.246983 | 44 |
AGGTCGG | 35 | 6.245731E-6 | 38.568607 | 25 |
GATCGGA | 595 | 0.0 | 37.056114 | 26 |
TCGGAAG | 615 | 0.0 | 36.58269 | 28 |
ATCGGAA | 595 | 0.0 | 36.299866 | 27 |
AGATCGG | 615 | 0.0 | 35.851036 | 25 |
CGAGATC | 635 | 0.0 | 35.076176 | 23 |
CCGAGAT | 640 | 0.0 | 34.80214 | 22 |
GAGATCG | 660 | 0.0 | 33.74753 | 24 |
GGTCGGA | 35 | 2.8197665E-4 | 32.140507 | 26 |
AATGCCG | 1585 | 0.0 | 26.969637 | 18 |
ATGCCGA | 1595 | 0.0 | 26.800547 | 19 |
GAATGCC | 1640 | 0.0 | 26.476723 | 17 |
TGCCGAG | 1630 | 0.0 | 26.363104 | 20 |
GCCGAGA | 1610 | 0.0 | 25.991888 | 21 |
GGAATGC | 1700 | 0.0 | 25.54225 | 16 |
GTCGGAA | 45 | 0.0012262977 | 24.998173 | 27 |
AGGAATG | 1800 | 0.0 | 23.873253 | 15 |