FastQCFastQC Report
Mon 6 Jun 2016
ERR1378351.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378351.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences562269
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT46980.835543129711935Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGCTAATCTCGTATGCC41290.7343460158749638Illumina Paired End PCR Primer 2 (97% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGCTAATCTCGTATGCCGTC37430.6656956012157882Illumina Paired End PCR Primer 2 (96% over 32bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC6860.122005659212939Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4800.041.715743
TGCCGTC4750.041.68116445
ATGCCGT4800.041.24698344
AGGTCGG356.245731E-638.56860725
GATCGGA5950.037.05611426
TCGGAAG6150.036.5826928
ATCGGAA5950.036.29986627
AGATCGG6150.035.85103625
CGAGATC6350.035.07617623
CCGAGAT6400.034.8021422
GAGATCG6600.033.7475324
GGTCGGA352.8197665E-432.14050726
AATGCCG15850.026.96963718
ATGCCGA15950.026.80054719
GAATGCC16400.026.47672317
TGCCGAG16300.026.36310420
GCCGAGA16100.025.99188821
GGAATGC17000.025.5422516
GTCGGAA450.001226297724.99817327
AGGAATG18000.023.87325315