FastQCFastQC Report
Mon 6 Jun 2016
ERR1378349.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378349.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1135675
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT44650.39315825390186454Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACCTAATCTCGTATGCC42060.3703524335747463Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTACCTAATCTCGTATGCCGTC34360.30255134611574613Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCCGT4450.037.41100744
TATGCCG4550.037.08323343
TGCCGTC4600.036.19108245
AGATCGG5900.035.8429325
GATCGGA6100.034.66775526
ATCGGAA6200.034.47145527
CCGAGAT6750.031.66266822
TCGGAAG7200.030.30867228
GAGATCG7200.029.3712924
CGAGATC7350.028.77187723
AATGCCG15450.025.04538318
TGCCGAG15400.024.98061420
ATGCCGA15600.024.94877219
GCCGAGA16100.023.75476521
GAATGCC16900.023.29587617
GGAATGC18850.021.12465316
CTCGTAT8650.020.5465442
TCTCGTA8700.020.42845741
ACCGTAC8900.020.22216630
CCGTACC8850.020.0822131