Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378345.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 775570 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTATGATCTCGTATGCC | 1765 | 0.2275745580669701 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1400 | 0.18051239733357402 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTATGATCTCGTATGCCGTC | 1307 | 0.16852121665355801 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 205 | 0.0 | 37.312954 | 43 |
ATGCCGT | 225 | 0.0 | 33.996246 | 44 |
TGCCGTC | 230 | 0.0 | 33.2572 | 45 |
GATCGGA | 260 | 0.0 | 32.015697 | 26 |
AGATCGG | 265 | 0.0 | 31.411629 | 25 |
TCGTATA | 45 | 3.4920242E-5 | 29.996689 | 9 |
TCGGAAG | 300 | 0.0 | 27.746939 | 28 |
ATCGGAA | 300 | 0.0 | 27.746939 | 27 |
CCGAGAT | 345 | 0.0 | 24.127773 | 22 |
CGAGATC | 355 | 0.0 | 23.448116 | 23 |
GAGATCG | 365 | 0.0 | 22.805702 | 24 |
AATGCCG | 705 | 0.0 | 22.657076 | 18 |
TCTCGTA | 430 | 0.0 | 22.497519 | 41 |
CTCGTAT | 430 | 0.0 | 21.974321 | 42 |
ATGCCGA | 735 | 0.0 | 21.732298 | 19 |
CGCTTAT | 425 | 0.0 | 21.703487 | 32 |
TGCCGAG | 750 | 0.0 | 21.597616 | 20 |
CCGCTTA | 435 | 0.0 | 21.204557 | 31 |
GTATGCC | 450 | 0.0 | 20.997683 | 45 |
AGACCGC | 450 | 0.0 | 20.997683 | 28 |