FastQCFastQC Report
Mon 6 Jun 2016
ERR1378345.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378345.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences775570
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTATGATCTCGTATGCC17650.2275745580669701Illumina Paired End PCR Primer 2 (97% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT14000.18051239733357402Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTATGATCTCGTATGCCGTC13070.16852121665355801Illumina Paired End PCR Primer 2 (96% over 32bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2050.037.31295443
ATGCCGT2250.033.99624644
TGCCGTC2300.033.257245
GATCGGA2600.032.01569726
AGATCGG2650.031.41162925
TCGTATA453.4920242E-529.9966899
TCGGAAG3000.027.74693928
ATCGGAA3000.027.74693927
CCGAGAT3450.024.12777322
CGAGATC3550.023.44811623
GAGATCG3650.022.80570224
AATGCCG7050.022.65707618
TCTCGTA4300.022.49751941
CTCGTAT4300.021.97432142
ATGCCGA7350.021.73229819
CGCTTAT4250.021.70348732
TGCCGAG7500.021.59761620
CCGCTTA4350.021.20455731
GTATGCC4500.020.99768345
AGACCGC4500.020.99768328