FastQCFastQC Report
Mon 6 Jun 2016
ERR1378342.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378342.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1006781
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT53230.5287147850426259Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTGATTATCTCGTATGCC47930.4760717574129826Illumina Paired End PCR Primer 2 (97% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTGATTATCTCGTATGCCGTC42310.4202502828321154Illumina Paired End PCR Primer 2 (96% over 32bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4650.039.673343
TGCCGTC4750.039.31170745
ATGCCGT5050.036.53086544
GATCGGA8350.036.3734726
ATCGGAA8450.036.2092627
AGATCGG8500.035.73158625
TCGGAAG8700.035.6859528
CCGAGAT9500.032.68081722
CGAGATC9700.032.0069923
GAGATCG9950.031.20279124
ATGCCGA19100.026.14912219
AATGCCG19450.025.67856818
TGCCGAG19800.025.3382820
CGCTGAT10350.024.12793232
GCCGAGA20750.023.9613721
ACCGCTG10300.023.80820830
GACCGCT10350.023.69319329
CCGCTGA10400.023.57928531
AGACCGC10500.023.56898328
GAATGCC21300.023.44827317