Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378340.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 597134 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3240 | 0.5425917800694652 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTCATTATCTCGTATGCC | 3012 | 0.5044093955460583 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGTCATTATCTCGTATGCCGTC | 2724 | 0.4561790150954392 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCCGTC | 340 | 0.0 | 41.68497 | 45 |
TATGCCG | 345 | 0.0 | 40.42876 | 43 |
ATGCCGT | 365 | 0.0 | 38.21349 | 44 |
GATCGGA | 420 | 0.0 | 35.35188 | 26 |
AGATCGG | 445 | 0.0 | 33.871365 | 25 |
ATCGGAA | 445 | 0.0 | 33.36582 | 27 |
TCGGAAG | 470 | 0.0 | 32.069695 | 28 |
CCGAGAT | 495 | 0.0 | 30.904491 | 22 |
CGAGATC | 500 | 0.0 | 30.595446 | 23 |
TGCGGCC | 30 | 0.0051490474 | 29.995533 | 26 |
ACGGGTT | 30 | 0.0051490474 | 29.995533 | 13 |
GAGATCG | 520 | 0.0 | 29.4187 | 24 |
AATGCCG | 1150 | 0.0 | 25.822243 | 18 |
ATGCCGA | 1155 | 0.0 | 25.710459 | 19 |
TGCCGAG | 1180 | 0.0 | 25.356394 | 20 |
GCCGAGA | 1205 | 0.0 | 24.270245 | 21 |
GAATGCC | 1280 | 0.0 | 23.19967 | 17 |
GGAATGC | 1320 | 0.0 | 22.66708 | 16 |
CGTATGC | 650 | 0.0 | 21.804447 | 41 |
CGGTCAT | 650 | 0.0 | 21.804447 | 29 |