FastQCFastQC Report
Mon 6 Jun 2016
ERR1378339.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378339.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences633795
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT22980.3625778051262632Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCATTATCTCGTATGCC21900.3455375949636712Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCATTATCTCGTATGCCGTC20010.3157172271791352Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2150.039.7629843
TGCCGTC2300.038.14789245
ATGCCGT2300.037.16974344
ATCGGAA3250.030.4581227
GATCGGA3300.029.99663526
AGATCGG3700.026.75375425
TCGGAAG3700.026.75375428
CCGTGCA5350.024.810331
GAGACCG5350.024.810327
AGACCGT5350.024.810328
CTCGTAT5300.024.61987942
TATCTCG5300.024.61987939
GACCGTG5400.024.58057629
TCTCGTA5350.024.38978641
CGTATGC5400.024.16395644
CGTGCAT5600.024.10443932
ATCTCGT5450.023.94226640
GTATGCC5450.023.94226645
ACCGTGC5550.023.91623530
TCGTATG5600.023.70269843