Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378334.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 645993 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3960 | 0.6130097384956184 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGTGTATCTCGTATGCC | 3703 | 0.5732260256690088 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGTGTATCTCGTATGCCGTC | 3030 | 0.46904533021255645 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 360 | 0.0 | 38.12126 | 43 |
ATGCCGT | 375 | 0.0 | 36.596413 | 44 |
TGCCGTC | 390 | 0.0 | 35.188858 | 45 |
GATCGGA | 610 | 0.0 | 34.299915 | 26 |
AGATCGG | 610 | 0.0 | 33.9311 | 25 |
TCGGAAG | 625 | 0.0 | 33.83668 | 28 |
ATCGGAA | 615 | 0.0 | 33.655235 | 27 |
CCGAGAT | 660 | 0.0 | 32.38319 | 22 |
CGAGATC | 670 | 0.0 | 31.228281 | 23 |
GAGATCG | 695 | 0.0 | 30.104963 | 24 |
AATGCCG | 1400 | 0.0 | 25.068972 | 18 |
TGAACCG | 45 | 0.0012266738 | 24.99755 | 10 |
ATGCCGA | 1405 | 0.0 | 24.819632 | 19 |
TGCCGAG | 1440 | 0.0 | 24.37261 | 20 |
GCCGAGA | 1415 | 0.0 | 24.326237 | 21 |
GAATGCC | 1470 | 0.0 | 23.875212 | 17 |
CTCGTAT | 745 | 0.0 | 23.252754 | 42 |
GACCGTT | 740 | 0.0 | 23.10584 | 29 |
TATCTCG | 755 | 0.0 | 22.944769 | 39 |
ACCGTTG | 750 | 0.0 | 22.797766 | 30 |