Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378332.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1308788 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTAGTATCTCGTATGCC | 3950 | 0.30180594565353597 | Illumina Paired End PCR Primer 2 (97% over 35bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3914 | 0.29905530918682016 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTTAGTATCTCGTATGCCGTC | 3212 | 0.24541789808586265 | Illumina Paired End PCR Primer 2 (96% over 32bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 300 | 0.0 | 38.24568 | 43 |
ATGCCGT | 330 | 0.0 | 34.768803 | 44 |
TGCCGTC | 350 | 0.0 | 32.782013 | 45 |
ATCGGAA | 535 | 0.0 | 29.856441 | 27 |
GATCGGA | 545 | 0.0 | 29.721413 | 26 |
AGATCGG | 580 | 0.0 | 27.92788 | 25 |
CCGCTTA | 790 | 0.0 | 26.199572 | 31 |
CGCTTAG | 790 | 0.0 | 26.199572 | 32 |
TCGGAAG | 660 | 0.0 | 25.565294 | 28 |
CGTATGC | 820 | 0.0 | 25.51541 | 44 |
ACCGCTT | 820 | 0.0 | 25.24105 | 30 |
CTCGTAT | 835 | 0.0 | 25.05705 | 42 |
TCTCGTA | 835 | 0.0 | 25.05705 | 41 |
TCGTATG | 850 | 0.0 | 24.879543 | 43 |
AGACCGC | 835 | 0.0 | 24.78762 | 28 |
GTATGCC | 855 | 0.0 | 24.734049 | 45 |
TATCTCG | 850 | 0.0 | 24.614866 | 39 |
GACCGCT | 860 | 0.0 | 24.067049 | 29 |
GAGACCG | 880 | 0.0 | 24.031376 | 27 |
CCGAGAT | 700 | 0.0 | 23.78303 | 22 |