FastQCFastQC Report
Mon 6 Jun 2016
ERR1378329.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378329.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1040499
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAATCTATCTCGTATGCC25120.24142262510583865Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT21140.2031717474019677Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCAATCTATCTCGTATGCCGTC17010.16347925370423227Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2700.036.66220543
TGCCGTC2700.036.66220545
ATGCCGT2750.035.99561744
GATCGGA3200.032.3398126
TCGGAAG3600.029.99634728
ATCGGAA3400.029.77578727
AGATCGG3500.029.56782725
AATGCCG8350.025.0568318
TGCCGAG8550.024.7338320
CCGAGAT4200.024.63985622
GAGATCG4200.024.63985624
CGAGATC4250.024.34997723
ATGCCGA8600.024.32843419
GCCGAGA9350.021.65511721
GACCGCA5000.021.14742729
CTCGTAT4900.021.11987942
CGCAATC5350.020.60496932
ACCGCAA5300.020.37487830
GAATGCC10350.020.2149317
CCGCAAT5350.020.18445831