Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378327.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 883389 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3477 | 0.39359783741930227 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAACCTATCTCGTATGCCGTC | 3226 | 0.3651845336539169 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAACCTATCTCGTATGCC | 2725 | 0.3084711265365541 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 375 | 0.0 | 39.595966 | 43 |
ATGCCGT | 380 | 0.0 | 39.074966 | 44 |
TGCCGTC | 415 | 0.0 | 36.3216 | 45 |
GATCGGA | 505 | 0.0 | 33.857933 | 26 |
ATCGGAA | 520 | 0.0 | 32.881268 | 27 |
TCGGAAG | 565 | 0.0 | 32.25335 | 28 |
AGATCGG | 540 | 0.0 | 31.246817 | 25 |
AATGCCG | 1205 | 0.0 | 27.258633 | 18 |
GAGATCG | 620 | 0.0 | 27.21497 | 24 |
CCGAGAT | 630 | 0.0 | 27.14009 | 22 |
ATGCCGA | 1225 | 0.0 | 26.813595 | 19 |
TGCCGAG | 1235 | 0.0 | 26.414312 | 20 |
CGAGATC | 650 | 0.0 | 26.305012 | 23 |
GCCGAGA | 1290 | 0.0 | 24.76492 | 21 |
GAATGCC | 1350 | 0.0 | 24.330854 | 17 |
GACCGTA | 630 | 0.0 | 23.21192 | 26 |
TATCTCG | 645 | 0.0 | 23.020912 | 36 |
CCGTAAC | 650 | 0.0 | 22.843826 | 28 |
CGTAACC | 645 | 0.0 | 22.67211 | 29 |
GGAATGC | 1460 | 0.0 | 22.651802 | 16 |