FastQCFastQC Report
Mon 6 Jun 2016
ERR1378327.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378327.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences883389
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT34770.39359783741930227Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAACCTATCTCGTATGCCGTC32260.3651845336539169Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAACCTATCTCGTATGCC27250.3084711265365541Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3750.039.59596643
ATGCCGT3800.039.07496644
TGCCGTC4150.036.321645
GATCGGA5050.033.85793326
ATCGGAA5200.032.88126827
TCGGAAG5650.032.2533528
AGATCGG5400.031.24681725
AATGCCG12050.027.25863318
GAGATCG6200.027.2149724
CCGAGAT6300.027.1400922
ATGCCGA12250.026.81359519
TGCCGAG12350.026.41431220
CGAGATC6500.026.30501223
GCCGAGA12900.024.7649221
GAATGCC13500.024.33085417
GACCGTA6300.023.2119226
TATCTCG6450.023.02091236
CCGTAAC6500.022.84382628
CGTAACC6450.022.6721129
GGAATGC14600.022.65180216