FastQCFastQC Report
Mon 6 Jun 2016
ERR1378324.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378324.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1282905
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT40900.3188077059486088Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCACAATCTCGTATGCC36340.2832633749186417Illumina Paired End PCR Primer 2 (97% over 36bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCACAATCTCGTATGCCGTC33860.26393224751637884Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACGAA301.1408328E-437.49532741
TATGCCG3800.036.70594843
ATGCCGT4200.033.2101444
TGCCGTC4150.033.06816545
AGATCGG5850.029.9962625
GATCGGA5900.029.74205226
ATCGGAA6100.028.76690527
TCGGAAG6750.026.99663228
CGTTCAC8350.023.97904432
GACCGTT8500.023.2912129
ACCGTTC8650.023.14740230
AGACCGT8550.022.89188228
CTCGTAT8650.022.62723542
TCGTATG8700.022.49719443
CGAGATC7900.022.49719223
CGTATGC8850.022.11588544
TCTCGTA8850.022.11588541
GAGATCG7950.022.07271824
GAGACCG9000.021.99725527
CCGAGAT8300.021.68404222