FastQCFastQC Report
Mon 6 Jun 2016
ERR1378323.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378323.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1063906
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTTATATCTCGTATGCC19620.1844147885245501Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT19240.18084304440429888Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTTATATCTCGTATGCCGTC17040.16016452581337073Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAACCGC250.002107794635.99736811
ATGCCGT2350.032.5508144
GATCGGA3150.032.1405126
TATGCCG2400.031.8726743
AGATCGG3250.031.1515725
ATCGGAA3400.029.77723527
TGCCGTC2600.029.42092745
TCGGAAG3600.028.12294428
GAGATCG4100.025.24205624
CGAGATC4300.023.5447923
AATGCCG8050.022.35861418
ATGCCGA8050.022.35861419
CGCGTTA4200.021.9626832
CCGCGTT4350.021.20534731
TGCCGAG8400.021.15916820
GCGTTAT4450.020.72882333
CCGAGAT4900.020.66175522
CGTTATA4500.020.49850334
ACCGCGT4550.020.27324330
TATCTCG4550.020.27324339