Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378323.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1063906 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTTATATCTCGTATGCC | 1962 | 0.1844147885245501 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1924 | 0.18084304440429888 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTTATATCTCGTATGCCGTC | 1704 | 0.16016452581337073 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAACCGC | 25 | 0.0021077946 | 35.997368 | 11 |
ATGCCGT | 235 | 0.0 | 32.55081 | 44 |
GATCGGA | 315 | 0.0 | 32.14051 | 26 |
TATGCCG | 240 | 0.0 | 31.87267 | 43 |
AGATCGG | 325 | 0.0 | 31.15157 | 25 |
ATCGGAA | 340 | 0.0 | 29.777235 | 27 |
TGCCGTC | 260 | 0.0 | 29.420927 | 45 |
TCGGAAG | 360 | 0.0 | 28.122944 | 28 |
GAGATCG | 410 | 0.0 | 25.242056 | 24 |
CGAGATC | 430 | 0.0 | 23.54479 | 23 |
AATGCCG | 805 | 0.0 | 22.358614 | 18 |
ATGCCGA | 805 | 0.0 | 22.358614 | 19 |
CGCGTTA | 420 | 0.0 | 21.96268 | 32 |
CCGCGTT | 435 | 0.0 | 21.205347 | 31 |
TGCCGAG | 840 | 0.0 | 21.159168 | 20 |
GCGTTAT | 445 | 0.0 | 20.728823 | 33 |
CCGAGAT | 490 | 0.0 | 20.661755 | 22 |
CGTTATA | 450 | 0.0 | 20.498503 | 34 |
ACCGCGT | 455 | 0.0 | 20.273243 | 30 |
TATCTCG | 455 | 0.0 | 20.273243 | 39 |