Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378322.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 885473 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCATTACATCTCGTATGCCGTC | 4290 | 0.48448682229723544 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 4106 | 0.4637069679143238 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCATTACATCTCGTATGCC | 3843 | 0.43400532822570537 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 550 | 0.0 | 41.314655 | 43 |
ATGCCGT | 580 | 0.0 | 39.177692 | 44 |
TGCCGTC | 615 | 0.0 | 36.948067 | 45 |
GATCGGA | 510 | 0.0 | 36.173386 | 26 |
AGATCGG | 505 | 0.0 | 36.086033 | 25 |
ATCGGAA | 520 | 0.0 | 35.47774 | 27 |
TCGGAAG | 550 | 0.0 | 34.76976 | 28 |
CGAGATC | 595 | 0.0 | 30.627636 | 23 |
CCGAGAT | 605 | 0.0 | 30.493265 | 22 |
GATTCGG | 30 | 0.0051487754 | 29.99744 | 12 |
GAGATCG | 640 | 0.0 | 28.474133 | 24 |
AATGCCG | 1505 | 0.0 | 27.505959 | 18 |
ATGCCGA | 1505 | 0.0 | 27.505959 | 19 |
TGCCGAG | 1520 | 0.0 | 27.086506 | 20 |
GAATGCC | 1615 | 0.0 | 25.911102 | 17 |
GCCGAGA | 1590 | 0.0 | 25.611021 | 21 |
CGTATGC | 985 | 0.0 | 23.297506 | 41 |
GACCGCA | 970 | 0.0 | 23.193897 | 26 |
CTCGTAT | 980 | 0.0 | 23.186798 | 39 |
TCGTATG | 980 | 0.0 | 23.186798 | 40 |