FastQCFastQC Report
Mon 6 Jun 2016
ERR1378314.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378314.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1199548
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGAAGATCTCGTATGCC37290.31086709327179907Illumina Paired End PCR Primer 2 (97% over 34bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT36750.30636539763310844Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGAAGATCTCGTATGCCGTC34030.283690189971556Illumina Paired End PCR Primer 2 (96% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4350.039.82267843
ATGCCGT4550.038.0722344
TGCCGTC4900.035.35278745
ATCGGAA4750.033.1538127
AGATCGG4800.032.80845625
TCGGAAG5100.032.6430428
GATCGGA5000.031.49611926
CCGAGAT5800.027.15182722
TGCCGAG13250.025.2987720
AATGCCG13500.024.99692218
ATGCCGA13750.024.5424319
CGAGATC6450.024.41559623
GAGATCG6650.023.68129224
GCCGAGA14250.023.04979121
GAATGCC14900.022.64821817
TCTCGTA8050.021.2396238
CTCGTAT8250.020.7247239
ACCGAAG8250.020.7247227
TCGTATG8300.020.5998740
ATCTCGT8350.020.4765237