Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378314.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1199548 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGAAGATCTCGTATGCC | 3729 | 0.31086709327179907 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3675 | 0.30636539763310844 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGAAGATCTCGTATGCCGTC | 3403 | 0.283690189971556 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 435 | 0.0 | 39.822678 | 43 |
ATGCCGT | 455 | 0.0 | 38.07223 | 44 |
TGCCGTC | 490 | 0.0 | 35.352787 | 45 |
ATCGGAA | 475 | 0.0 | 33.15381 | 27 |
AGATCGG | 480 | 0.0 | 32.808456 | 25 |
TCGGAAG | 510 | 0.0 | 32.64304 | 28 |
GATCGGA | 500 | 0.0 | 31.496119 | 26 |
CCGAGAT | 580 | 0.0 | 27.151827 | 22 |
TGCCGAG | 1325 | 0.0 | 25.29877 | 20 |
AATGCCG | 1350 | 0.0 | 24.996922 | 18 |
ATGCCGA | 1375 | 0.0 | 24.54243 | 19 |
CGAGATC | 645 | 0.0 | 24.415596 | 23 |
GAGATCG | 665 | 0.0 | 23.681292 | 24 |
GCCGAGA | 1425 | 0.0 | 23.049791 | 21 |
GAATGCC | 1490 | 0.0 | 22.648218 | 17 |
TCTCGTA | 805 | 0.0 | 21.23962 | 38 |
CTCGTAT | 825 | 0.0 | 20.72472 | 39 |
ACCGAAG | 825 | 0.0 | 20.72472 | 27 |
TCGTATG | 830 | 0.0 | 20.59987 | 40 |
ATCTCGT | 835 | 0.0 | 20.47652 | 37 |