Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378313.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 958607 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCAACATCTCGTATGCC | 4397 | 0.45868640642098374 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3766 | 0.39286172539945985 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCAACATCTCGTATGCCGTC | 3489 | 0.3639656292933392 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 500 | 0.0 | 37.79566 | 43 |
ATGCCGT | 505 | 0.0 | 36.975952 | 44 |
TGCCGTC | 520 | 0.0 | 35.90934 | 45 |
AGATCGG | 545 | 0.0 | 27.244581 | 25 |
ATCGGAA | 530 | 0.0 | 26.742214 | 27 |
GATCGGA | 545 | 0.0 | 26.418987 | 26 |
TCGGAAG | 575 | 0.0 | 25.823124 | 28 |
CCGAGAT | 630 | 0.0 | 23.925825 | 22 |
CGAGATC | 630 | 0.0 | 23.925825 | 23 |
GAGATCG | 635 | 0.0 | 23.737434 | 24 |
AATGCCG | 1620 | 0.0 | 21.664179 | 18 |
TGCCGAG | 1655 | 0.0 | 21.07009 | 20 |
ATGCCGA | 1665 | 0.0 | 20.943544 | 19 |
GACCGTT | 950 | 0.0 | 20.839714 | 29 |
CGTATGC | 945 | 0.0 | 20.71191 | 44 |
ATCTCGT | 960 | 0.0 | 20.622631 | 40 |
ACCGTTC | 960 | 0.0 | 20.622631 | 30 |
CCGTTCA | 960 | 0.0 | 20.622631 | 31 |
TCTCGTA | 950 | 0.0 | 20.6029 | 41 |
CTCGTAT | 955 | 0.0 | 20.49503 | 42 |