FastQCFastQC Report
Mon 6 Jun 2016
ERR1378313.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378313.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences958607
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCAACATCTCGTATGCC43970.45868640642098374Illumina Paired End PCR Primer 2 (97% over 36bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT37660.39286172539945985Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTTCAACATCTCGTATGCCGTC34890.3639656292933392Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG5000.037.7956643
ATGCCGT5050.036.97595244
TGCCGTC5200.035.9093445
AGATCGG5450.027.24458125
ATCGGAA5300.026.74221427
GATCGGA5450.026.41898726
TCGGAAG5750.025.82312428
CCGAGAT6300.023.92582522
CGAGATC6300.023.92582523
GAGATCG6350.023.73743424
AATGCCG16200.021.66417918
TGCCGAG16550.021.0700920
ATGCCGA16650.020.94354419
GACCGTT9500.020.83971429
CGTATGC9450.020.7119144
ATCTCGT9600.020.62263140
ACCGTTC9600.020.62263130
CCGTTCA9600.020.62263131
TCTCGTA9500.020.602941
CTCGTAT9550.020.4950342