Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378310.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 975605 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAATGTAATCTCGTATGCC | 3775 | 0.38693938632950836 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3222 | 0.3302566100009738 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAATGTAATCTCGTATGCCGTC | 3013 | 0.30883400556577717 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 320 | 0.0 | 39.371502 | 43 |
ATGCCGT | 340 | 0.0 | 37.055534 | 44 |
AGATCGG | 515 | 0.0 | 35.385204 | 25 |
TGCCGTC | 365 | 0.0 | 34.517483 | 45 |
GATCGGA | 540 | 0.0 | 33.747 | 26 |
ATCGGAA | 560 | 0.0 | 32.54175 | 27 |
TCGGAAG | 615 | 0.0 | 30.728975 | 28 |
GAGATCG | 620 | 0.0 | 29.392551 | 24 |
CCGAGAT | 635 | 0.0 | 29.052538 | 22 |
CGAGATC | 635 | 0.0 | 28.698238 | 23 |
AATGCCG | 1255 | 0.0 | 25.097372 | 18 |
ATGCCGA | 1295 | 0.0 | 24.322165 | 19 |
TGCCGAG | 1325 | 0.0 | 23.771473 | 20 |
GCCGAGA | 1370 | 0.0 | 22.66222 | 21 |
GAATGCC | 1450 | 0.0 | 21.877365 | 17 |
CCGAATG | 695 | 0.0 | 21.68872 | 31 |
TCTCGTA | 700 | 0.0 | 21.533802 | 41 |
ACCGAAT | 705 | 0.0 | 21.381079 | 30 |
CTCGTAT | 710 | 0.0 | 21.230509 | 42 |
GACCGAA | 720 | 0.0 | 20.93564 | 29 |