FastQCFastQC Report
Mon 6 Jun 2016
ERR1378310.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378310.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences975605
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAATGTAATCTCGTATGCC37750.38693938632950836Illumina Paired End PCR Primer 2 (97% over 34bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT32220.3302566100009738Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAATGTAATCTCGTATGCCGTC30130.30883400556577717Illumina Paired End PCR Primer 2 (96% over 31bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG3200.039.37150243
ATGCCGT3400.037.05553444
AGATCGG5150.035.38520425
TGCCGTC3650.034.51748345
GATCGGA5400.033.74726
ATCGGAA5600.032.5417527
TCGGAAG6150.030.72897528
GAGATCG6200.029.39255124
CCGAGAT6350.029.05253822
CGAGATC6350.028.69823823
AATGCCG12550.025.09737218
ATGCCGA12950.024.32216519
TGCCGAG13250.023.77147320
GCCGAGA13700.022.6622221
GAATGCC14500.021.87736517
CCGAATG6950.021.6887231
TCTCGTA7000.021.53380241
ACCGAAT7050.021.38107930
CTCGTAT7100.021.23050942
GACCGAA7200.020.9356429