Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378309.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1158923 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAAGTAATCTCGTATGCC | 4507 | 0.38889555216351734 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 3531 | 0.30467943081637 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAAGTAATCTCGTATGCCGTC | 3140 | 0.2709412100717649 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGTCG | 25 | 0.0021077406 | 35.997826 | 40 |
TATGCCG | 390 | 0.0 | 35.76707 | 43 |
ATGCCGT | 415 | 0.0 | 33.612427 | 44 |
TGCCGTC | 420 | 0.0 | 33.21228 | 45 |
GATCGGA | 455 | 0.0 | 31.64644 | 26 |
ATCGGAA | 470 | 0.0 | 30.157753 | 27 |
AGATCGG | 480 | 0.0 | 29.998188 | 25 |
TCGGAAG | 490 | 0.0 | 29.385979 | 28 |
CCGTCGG | 40 | 6.168354E-4 | 28.123302 | 13 |
CCGAGAT | 550 | 0.0 | 26.589304 | 22 |
ACCGTAA | 910 | 0.0 | 25.218258 | 30 |
GACCGTA | 910 | 0.0 | 24.97102 | 29 |
CCGTAAG | 930 | 0.0 | 24.675928 | 31 |
TCTCGTA | 915 | 0.0 | 24.58868 | 41 |
AGACCGT | 925 | 0.0 | 24.566082 | 28 |
CTCGTAT | 930 | 0.0 | 24.434008 | 42 |
CGTATGC | 930 | 0.0 | 24.192087 | 44 |
TCGTATG | 930 | 0.0 | 24.192087 | 43 |
CGAGATC | 610 | 0.0 | 23.97396 | 23 |
CGTAAGT | 940 | 0.0 | 23.934725 | 32 |