FastQCFastQC Report
Mon 6 Jun 2016
ERR1378304.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378304.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1057819
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCACGA352.8201044E-432.14309336
ACCGCAC600.00651166118.7492529
TCGTATA800.001711180216.8743279
CGCCACC1502.572835E-615.000115
CGTGAGC2456.91216E-1114.698851
CGGCTAA1108.59014E-414.31761117
ACCACGC2052.177876E-814.2677239
CCACGCC2359.0185495E-913.4037210
CACCACG2653.5361154E-912.7353418
TCGGCTC2452.2391578E-711.93829822
CGCCTGG1701.3780732E-411.91128913
CCACCGC1600.00110813411.2495517
GTGGTAG1650.001432996210.9086557
CCTGTAC1450.00680681310.8657441
CGCTCCA1450.00682597510.8616359
GCCCGGC1700.001837845110.58781214
TCCAACG2605.893671E-610.3846925
AACGAAA2201.3096559E-410.2268658
CCAACGA2657.396484E-610.1887556
GCCACCG2006.203239E-410.1250746
Produced by FastQC (version 0.11.5)