FastQCFastQC Report
Mon 6 Jun 2016
ERR1378295.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378295.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1230654
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTATT450.001226855924.9991211
CTTCGTA1403.088644E-919.2850367
ACCCGGC1002.0474467E-517.99936714
CGTATAA1153.4502264E-617.60807410
TCGTATA1205.1754323E-616.8744079
TCTTCGT1552.0633888E-715.9697746
CCTTCGT1553.6022302E-614.5221081
TCGTTGG2052.1718733E-814.271274
ATCTTCG1758.1581675E-714.1446575
TTCGTTG2408.021743E-1014.0654343
CGGCTAA1605.028687E-614.06200517
CGTTGGA2102.984234E-813.9303455
CCGGCTA1504.2724016E-513.49952416
TTCGTAT1504.2724016E-513.4995248
CACCCGG1352.652974E-413.33286413
CTTCGTT1709.375983E-613.2391312
AAACGGG2401.7134698E-712.18707211
CGCCACC2106.305958E-611.7872145
GCCACCG1558.484029E-411.6143816
GCGAGAC1650.001427891710.9135841