Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378295.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1230654 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGTATT | 45 | 0.0012268559 | 24.99912 | 11 |
CTTCGTA | 140 | 3.088644E-9 | 19.285036 | 7 |
ACCCGGC | 100 | 2.0474467E-5 | 17.999367 | 14 |
CGTATAA | 115 | 3.4502264E-6 | 17.608074 | 10 |
TCGTATA | 120 | 5.1754323E-6 | 16.874407 | 9 |
TCTTCGT | 155 | 2.0633888E-7 | 15.969774 | 6 |
CCTTCGT | 155 | 3.6022302E-6 | 14.522108 | 1 |
TCGTTGG | 205 | 2.1718733E-8 | 14.27127 | 4 |
ATCTTCG | 175 | 8.1581675E-7 | 14.144657 | 5 |
TTCGTTG | 240 | 8.021743E-10 | 14.065434 | 3 |
CGGCTAA | 160 | 5.028687E-6 | 14.062005 | 17 |
CGTTGGA | 210 | 2.984234E-8 | 13.930345 | 5 |
CCGGCTA | 150 | 4.2724016E-5 | 13.499524 | 16 |
TTCGTAT | 150 | 4.2724016E-5 | 13.499524 | 8 |
CACCCGG | 135 | 2.652974E-4 | 13.332864 | 13 |
CTTCGTT | 170 | 9.375983E-6 | 13.239131 | 2 |
AAACGGG | 240 | 1.7134698E-7 | 12.187072 | 11 |
CGCCACC | 210 | 6.305958E-6 | 11.787214 | 5 |
GCCACCG | 155 | 8.484029E-4 | 11.614381 | 6 |
GCGAGAC | 165 | 0.0014278917 | 10.913584 | 1 |