FastQCFastQC Report
Mon 6 Jun 2016
ERR1378292.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378292.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1071627
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGTA406.1668403E-428.12424329
CCGTACA406.1668403E-428.12424331
ACCGTAC406.1668403E-428.12424330
CGTATGC507.159268E-526.99927144
CGTACAA450.001226693224.99932732
TCCCGAC450.001226693224.99932735
GAGCGGT602.463914E-422.5046446
AGACCGT500.002264865422.49939328
TCGTATG602.4678087E-422.49939343
TCTCGTA706.9843134E-419.28519441
GAGACCG750.001110357917.99951427
CGTGAGC1907.967174E-915.3986331
CCGGGTG1351.5775715E-515.0037981
CCGACCT900.00375437314.99959737
GGCGACA1108.5894286E-414.31779629
ATGCCGA950.005376660314.21014322
CCCGACC950.005376660314.21014336
GGCGGAG1656.910266E-613.63599731
GGGCGAC1000.007551924313.49963628
TCGCTTG2207.9238634E-712.27182415
Produced by FastQC (version 0.11.5)