FastQCFastQC Report
Mon 6 Jun 2016
ERR1378290.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378290.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences864652
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTCGCA300.00514319930.004016
ACGCCCA1051.4452726E-619.28494612
CCCGCCA951.3130455E-518.9509963
CGCCACC1555.329639E-1018.873495
CGTGAGC1501.4184297E-716.503161
CCGCCAC1209.731808E-515.0028734
CGGCCTG900.003753914314.99940210
CACGCCC1806.8677764E-814.99940211
ACCACGC1901.3311546E-714.2099619
CACCACG2102.9867806E-813.9280188
GCCACCA6300.013.5732426
TGCCCGG1000.00755101713.49946213
GACTAGG1000.00755101713.49946242
CCACGCC2053.3610922E-713.17020710
CAGCTAA3850.012.27223917
CGCCCAG2502.908091E-711.69953313
CCACCAC5400.011.6675517
AGCTAAT4151.8189894E-1211.38508918
ACCAAGC1650.001432536310.9086569
GCCCGGC1500.00877671810.49958214
Produced by FastQC (version 0.11.5)