Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378287.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1008553 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGCCCG | 70 | 2.8861905E-8 | 28.927805 | 12 |
GTCCGGT | 40 | 6.166568E-4 | 28.124256 | 14 |
CTCGTAT | 50 | 7.1564165E-5 | 27.000624 | 42 |
GACCGTA | 60 | 2.4676602E-4 | 22.499405 | 29 |
TCTCGTA | 65 | 4.2370724E-4 | 20.769712 | 41 |
CGTAGGT | 65 | 4.2384904E-4 | 20.76868 | 32 |
GCGGTTC | 80 | 7.563359E-5 | 19.68698 | 8 |
CGTATGC | 70 | 6.9815724E-4 | 19.28616 | 44 |
TCGTATG | 70 | 6.9815724E-4 | 19.28616 | 43 |
CGCCCGG | 105 | 1.4455745E-6 | 19.285206 | 13 |
CCGGCTA | 140 | 3.086825E-9 | 19.285204 | 16 |
CCGTAGG | 70 | 6.983902E-4 | 19.285204 | 31 |
CGGCTAA | 130 | 2.7721399E-8 | 19.037958 | 17 |
ACCGTAG | 75 | 0.001110292 | 17.999525 | 30 |
ATCTCGT | 90 | 1.8650608E-4 | 17.500404 | 40 |
CCGAGAC | 105 | 3.1125164E-5 | 17.142405 | 25 |
AGACCGT | 85 | 0.0025653255 | 15.881933 | 28 |
CACCCGG | 85 | 0.0025653255 | 15.881933 | 13 |
AAGAGCG | 100 | 4.1641042E-4 | 15.751146 | 4 |
GAGCGGT | 100 | 4.1641042E-4 | 15.751146 | 6 |