FastQCFastQC Report
Mon 6 Jun 2016
ERR1378286.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378286.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences646622
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGT250.002104776436.0057536
CGACTGG300.005141591730.0047975
CCGAAAT750.00110947118.00009327
TCCACGT901.8651143E-417.4987379
CGTGAGC1859.552423E-814.5991851
TCTTCGT1301.9214695E-413.8483666
CTCGGCT1150.00120143713.69466321
CTTCGTA1000.007546066313.500077
TCGGCTC1200.00165594313.12405322
ATCTTCG1403.5977954E-412.8591995
ATCTCGG1350.00400600311.66582519
ACCATGC2801.0340773E-711.2491889
TCTCGGC1450.006822763510.86128520
CGGCTCA1450.006822763510.86128523
AGTGAGC3653.3105607E-910.479506543
CCACCAT3704.14002E-910.3378917
GAGCCAC3602.9778676E-810.0015984
CCATGCC3401.3919816E-79.92575510
GCAGACT2504.3419182E-59.89928616
GCCACCA4406.9303496E-109.7174636