Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378286.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 646622 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 25 | 0.0021047764 | 36.005753 | 6 |
CGACTGG | 30 | 0.0051415917 | 30.004797 | 5 |
CCGAAAT | 75 | 0.001109471 | 18.000093 | 27 |
TCCACGT | 90 | 1.8651143E-4 | 17.498737 | 9 |
CGTGAGC | 185 | 9.552423E-8 | 14.599185 | 1 |
TCTTCGT | 130 | 1.9214695E-4 | 13.848366 | 6 |
CTCGGCT | 115 | 0.001201437 | 13.694663 | 21 |
CTTCGTA | 100 | 0.0075460663 | 13.50007 | 7 |
TCGGCTC | 120 | 0.001655943 | 13.124053 | 22 |
ATCTTCG | 140 | 3.5977954E-4 | 12.859199 | 5 |
ATCTCGG | 135 | 0.004006003 | 11.665825 | 19 |
ACCATGC | 280 | 1.0340773E-7 | 11.249188 | 9 |
TCTCGGC | 145 | 0.0068227635 | 10.861285 | 20 |
CGGCTCA | 145 | 0.0068227635 | 10.861285 | 23 |
AGTGAGC | 365 | 3.3105607E-9 | 10.4795065 | 43 |
CCACCAT | 370 | 4.14002E-9 | 10.337891 | 7 |
GAGCCAC | 360 | 2.9778676E-8 | 10.001598 | 4 |
CCATGCC | 340 | 1.3919816E-7 | 9.925755 | 10 |
GCAGACT | 250 | 4.3419182E-5 | 9.899286 | 16 |
GCCACCA | 440 | 6.9303496E-10 | 9.717463 | 6 |