Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378283.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1083436 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTATAC | 30 | 0.00514824 | 29.998678 | 32 |
GAGCGGT | 40 | 6.16085E-4 | 28.12895 | 6 |
GCGGTTC | 45 | 0.0012264946 | 25.000051 | 8 |
AATGCCG | 45 | 0.0012268246 | 24.998898 | 21 |
ATCTCGT | 70 | 2.703729E-5 | 22.499008 | 40 |
TCTCGTA | 50 | 0.0022651074 | 22.499006 | 41 |
ACCGCAA | 55 | 0.0039373995 | 20.453644 | 30 |
CTTCGTT | 205 | 0.0 | 19.763435 | 2 |
CGGTTCA | 60 | 0.0065119187 | 18.749174 | 9 |
CGGGATT | 180 | 1.0913936E-11 | 18.749172 | 14 |
GACCGCA | 85 | 1.2047674E-4 | 18.528595 | 29 |
TTCGTTG | 270 | 0.0 | 18.337603 | 3 |
TCGTATA | 140 | 6.478149E-8 | 17.677792 | 9 |
TCGTTGG | 245 | 0.0 | 17.453043 | 4 |
CGTTGGA | 235 | 0.0 | 17.236464 | 5 |
ACGGGAT | 170 | 1.8299033E-9 | 17.205124 | 13 |
CCTTCGT | 240 | 0.0 | 16.883606 | 1 |
AACGGGA | 200 | 5.0931703E-11 | 16.874256 | 12 |
CGTATAA | 150 | 1.4232137E-7 | 16.499271 | 10 |
TTCGTAT | 165 | 4.199028E-7 | 15.0000305 | 8 |