FastQCFastQC Report
Mon 6 Jun 2016
ERR1378283.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378283.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1083436
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATAC300.0051482429.99867832
GAGCGGT406.16085E-428.128956
GCGGTTC450.001226494625.0000518
AATGCCG450.001226824624.99889821
ATCTCGT702.703729E-522.49900840
TCTCGTA500.002265107422.49900641
ACCGCAA550.003937399520.45364430
CTTCGTT2050.019.7634352
CGGTTCA600.006511918718.7491749
CGGGATT1801.0913936E-1118.74917214
GACCGCA851.2047674E-418.52859529
TTCGTTG2700.018.3376033
TCGTATA1406.478149E-817.6777929
TCGTTGG2450.017.4530434
CGTTGGA2350.017.2364645
ACGGGAT1701.8299033E-917.20512413
CCTTCGT2400.016.8836061
AACGGGA2005.0931703E-1116.87425612
CGTATAA1501.4232137E-716.49927110
TTCGTAT1654.199028E-715.00003058