FastQCFastQC Report
Mon 6 Jun 2016
ERR1378276.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378276.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences602286
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCACCA300.00514566129.9996137
ATCGCAC300.00514566129.9996135
CACGCCC851.204118E-418.52763411
CACCACG1358.5668944E-716.666458
ACCACGC1251.379851E-414.3986199
GTTAGCC1000.007550326613.49870517
CCACGCC1403.6049352E-412.85590910
CGCCACC1250.002249583112.5998375
GGGCCTT1350.004003684511.66651527
GCCACCA4250.011.6469086
CCCGGCT1400.0052452211.25172341
AGCCACC2352.1944841E-510.5317795
CCACCAC4458.0035534E-1110.1122287
GCTCATG2701.0078168E-49.16578813
GCTAATT4203.2923708E-89.10626919
AGTGAGC3401.4814346E-58.60354437
GAGCCAC2952.6298082E-48.3904194
TAGTAGA2700.00101528568.33391836
TGAACCC2700.00101695848.33253414
TTGCAGT3806.6627726E-68.28936733
Produced by FastQC (version 0.11.5)