Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378275.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1097293 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGAACA | 55 | 0.003936911 | 20.454111 | 18 |
CGGTGCC | 100 | 0.0075495164 | 13.500328 | 1 |
GGGGGGC | 125 | 0.0022517645 | 12.599731 | 32 |
CGGCTCA | 205 | 4.8263773E-6 | 12.072914 | 23 |
TCGGCTC | 170 | 1.3779229E-4 | 11.911511 | 22 |
CGAAATC | 135 | 0.004007522 | 11.666419 | 11 |
CCTTCGT | 145 | 0.0068229907 | 10.862333 | 1 |
TCCGTCT | 145 | 0.006825302 | 10.861838 | 6 |
TTCGTTG | 230 | 1.7339531E-5 | 10.76064 | 3 |
CCGCCAC | 195 | 4.9149065E-4 | 10.384394 | 4 |
CCCGCCA | 225 | 1.6431753E-4 | 9.999788 | 3 |
CTCGGCT | 205 | 7.7856035E-4 | 9.877839 | 21 |
CGTTGGA | 235 | 2.5460115E-4 | 9.574264 | 5 |
TCGTTGG | 240 | 3.145273E-4 | 9.374801 | 4 |
GCAGACT | 340 | 1.4871603E-6 | 9.264509 | 16 |
CGCCTGT | 395 | 1.253884E-7 | 9.11373 | 18 |
CGGGGTT | 200 | 0.0070411833 | 9.000218 | 1 |
TCTCGGC | 250 | 4.7328277E-4 | 8.999808 | 20 |
TCCTAAC | 280 | 1.4980737E-4 | 8.8395 | 39 |
GCCACCG | 230 | 0.0022259871 | 8.80416 | 6 |