FastQCFastQC Report
Mon 6 Jun 2016
ERR1378275.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378275.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1097293
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGAACA550.00393691120.45411118
CGGTGCC1000.007549516413.5003281
GGGGGGC1250.002251764512.59973132
CGGCTCA2054.8263773E-612.07291423
TCGGCTC1701.3779229E-411.91151122
CGAAATC1350.00400752211.66641911
CCTTCGT1450.006822990710.8623331
TCCGTCT1450.00682530210.8618386
TTCGTTG2301.7339531E-510.760643
CCGCCAC1954.9149065E-410.3843944
CCCGCCA2251.6431753E-49.9997883
CTCGGCT2057.7856035E-49.87783921
CGTTGGA2352.5460115E-49.5742645
TCGTTGG2403.145273E-49.3748014
GCAGACT3401.4871603E-69.26450916
CGCCTGT3951.253884E-79.1137318
CGGGGTT2000.00704118339.0002181
TCTCGGC2504.7328277E-48.99980820
TCCTAAC2801.4980737E-48.839539
GCCACCG2300.00222598718.804166