FastQCFastQC Report
Mon 6 Jun 2016
ERR1378274.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378274.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences746291
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTGT450.001226715724.99802810
CGTGAGC1305.0931703E-1122.5117991
CTCGTAT500.002264028222.49973142
AGACCGA600.00650885518.74977728
CCTTCGT1053.096092E-517.1518481
CGTATAA800.00171098916.87366910
GCCACCG1358.573552E-716.666476
AGCGCTC850.002564238615.8821637
TCGTTGG1402.221106E-514.4689624
CTTCGTT1251.3740713E-414.4065862
CTTCGTA950.005374114.2103587
TGCCCGG950.005376489414.20940513
CGCCACC1801.1208977E-613.7498365
TCGTATA1000.00755169813.4989359
AGAGACG1352.65026E-413.33317640
GAGCCAC3750.013.2042674
TCGCTTG1200.001656444413.12396315
CGTTGGA1555.805122E-513.0643615
GAAACGG1403.606216E-412.85612910
TTCGTTG1607.786456E-512.661193