FastQCFastQC Report
Mon 6 Jun 2016
ERR1378271.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378271.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1032706
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGC708.1490725E-1032.14199428
TCGTATG708.1490725E-1032.14199443
CGTATGC803.3960532E-928.12424344
CGCAATG803.3960532E-928.12424332
GCGGTTC903.965397E-1027.499268
CTCGTAT856.4810592E-926.46987742
ACCGCAA856.4810592E-926.46987730
CCGCAAT856.4810592E-926.46987731
AGCGGTT1052.3646862E-923.5719367
GAGCGGT1052.3646862E-923.5719366
CGGTTCA1104.0527084E-922.4993959
GACCGCA1003.644527E-822.49939329
TCTCGTA1003.644527E-822.49939341
CCGAGAC1156.7684596E-921.5211625
GAGACCG1056.1079845E-821.42799627
AATGCCG1301.2278178E-920.76867321
ATGCCGA1201.105218E-820.62444522
AGAGCGG1302.7706847E-819.0388725
ATCTCGT1202.4967449E-718.74949640
AACGGGT600.006511069418.74949612