FastQCFastQC Report
Mon 6 Jun 2016
ERR1378270.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378270.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences988162
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGGTT552.748493E-936.81768430
CTCGTAT552.748493E-936.81768442
CCGGTTG552.748493E-936.81768431
GCGGTTC653.6743586E-1034.6149188
CGTATGC651.4033503E-831.15342744
GACCGGT651.4033503E-831.15342729
TCTCGTA651.4033503E-831.15342741
AACGGGT300.00514725229.99959612
CGGTTGG702.8858267E-828.92818332
GAGCGGT803.3924152E-928.1260436
AGCGGTT803.3942342E-928.1246227
AGACCGG801.0536132E-725.3121628
CGCCCGG901.1907105E-824.99966213
CCGAGAC851.8933315E-723.82320825
AGAGCGG1003.6416168E-822.5008345
ACGCCCG602.4673942E-422.49969712
ATGCCGA903.2864045E-722.49969722
AAGAGCG1056.099981E-821.4304524
CGGTTCA1056.106529E-821.4282829
AATGCCG955.530819E-721.31550221