FastQCFastQC Report
Mon 6 Jun 2016
ERR1378267.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378267.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1086913
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCTAA654.2386696E-420.76876417
CCGGCTA807.563825E-519.68705616
ATGATCG600.006511118318.74957824
GTGCAAC1200.001656586913.12470436
TCCAACG2401.7114508E-712.1877875
CCGGGCG1450.006815966710.8638241
ACGAAGG1450.006825295710.8618249
CCAACGA2301.7330533E-510.7611236
CGTTTCC2657.3835126E-610.1903251
CGGTGGC2302.0506774E-49.7823898
CGCCTGT3258.0423706E-79.6920918
CAACGAA2352.544815E-49.5746947
GAGCCAC4501.0477379E-99.5002234
CTCGGGA2200.00148548339.20433935
GCGGTGG2250.00182215119.0002127
TCGGGAG2000.0070437968.99979836
TACTCGG2000.0070437968.99979833
CATGAGC3857.945946E-68.183141
ACCACGC2500.00473004538.09981821
GAGTAGC3104.4974024E-47.98405936
Produced by FastQC (version 0.11.5)