FastQCFastQC Report
Mon 6 Jun 2016
ERR1378266.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378266.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1093338
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCAACGC300.00514781629.99920719
CGGCTAA1653.6379788E-1220.45400417
CCGGCTA1552.3646862E-1120.32204416
AGCGCTC706.9801137E-419.286977
ACGCCCG851.2046164E-418.52892312
ACCGCGC851.2046164E-418.5289239
CCCGGCT2150.017.79022815
CGCGCCC901.8659489E-417.49953811
CGCCCGG1358.583829E-716.66622513
GCCCGGC2353.6379788E-1115.31874514
CCCGGGT1502.57393E-614.99960445
AGCCGAG1209.75366E-514.99960341
CTCCCGG2001.5734258E-814.62461443
CGCCACC1553.6143174E-614.5170745
CACCGCG1108.586616E-414.3184598
CGTGAGC1758.1446524E-714.1463651
TCCCGGG2359.0185495E-913.40390244
CACGCCC1851.5279038E-613.37802411
GGCTAAT3950.013.10091918
CCACGCC2309.8358214E-812.71705510
Produced by FastQC (version 0.11.5)