FastQCFastQC Report
Mon 6 Jun 2016
ERR1378264.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378264.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences948251
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT451.9281288E-839.9991142
GACCGGC300.005147370529.9993312
TCTCGTA702.8856448E-828.92792741
CGTATGC709.306459E-725.71371344
AGACCGA709.306459E-725.71371328
GACCGAC751.6974536E-623.99946629
GCGGTTC802.9744187E-622.4994988
CGACAGG802.9744187E-622.49949832
TATCTCG802.9744187E-622.49949839
CCGAGAC802.9744187E-622.49949825
ACCGACA955.530801E-721.31531330
AGCGGTT955.530801E-721.3153137
CCGACAG908.250336E-619.99955631
AAGAGCG951.3132969E-518.9509434
GAGACCG951.31568795E-518.94694527
TCGTATG951.31568795E-518.94694543
GCGATCT851.2043644E-418.52916
ATGCCGA1102.2556123E-618.40868222
CGGAAGA1002.0408503E-518.0052951
AATGCCG1002.0464136E-517.999621