Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378263.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1362862 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGCCCG | 90 | 3.2892422E-7 | 22.499027 | 12 |
CGCCCGG | 150 | 2.575507E-6 | 14.9993515 | 13 |
CCGCCAC | 135 | 2.6485405E-4 | 13.335693 | 4 |
CGAGATC | 175 | 1.2636661E-5 | 12.861306 | 1 |
CACGCCC | 210 | 4.5107845E-7 | 12.856587 | 11 |
CGGGATT | 215 | 6.000464E-7 | 12.557596 | 14 |
CTTCGTT | 220 | 7.901617E-7 | 12.27535 | 2 |
GCCCTAT | 135 | 0.004007931 | 11.666591 | 41 |
AGCGCTC | 155 | 8.497192E-4 | 11.612402 | 7 |
CCGGCTA | 175 | 1.8056597E-4 | 11.570929 | 16 |
ACGGGAT | 215 | 8.211942E-6 | 11.51113 | 13 |
GATCCGC | 140 | 0.0052572526 | 11.2499275 | 27 |
GCGCTCC | 140 | 0.00525869 | 11.249515 | 8 |
TCGTTGG | 285 | 1.321041E-7 | 11.054587 | 4 |
CGTTGGA | 285 | 1.3244062E-7 | 11.05256 | 5 |
CCTTCGT | 245 | 2.8857648E-6 | 11.023975 | 1 |
ACCACGC | 245 | 2.898496E-6 | 11.019932 | 9 |
AAAGCGC | 205 | 6.400647E-5 | 10.975538 | 5 |
GCTAGAC | 210 | 8.1762686E-5 | 10.714216 | 33 |
GAGCCGA | 210 | 8.1762686E-5 | 10.714216 | 40 |