FastQCFastQC Report
Mon 6 Jun 2016
ERR1378263.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378263.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1362862
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGCCCG903.2892422E-722.49902712
CGCCCGG1502.575507E-614.999351513
CCGCCAC1352.6485405E-413.3356934
CGAGATC1751.2636661E-512.8613061
CACGCCC2104.5107845E-712.85658711
CGGGATT2156.000464E-712.55759614
CTTCGTT2207.901617E-712.275352
GCCCTAT1350.00400793111.66659141
AGCGCTC1558.497192E-411.6124027
CCGGCTA1751.8056597E-411.57092916
ACGGGAT2158.211942E-611.5111313
GATCCGC1400.005257252611.249927527
GCGCTCC1400.0052586911.2495158
TCGTTGG2851.321041E-711.0545874
CGTTGGA2851.3244062E-711.052565
CCTTCGT2452.8857648E-611.0239751
ACCACGC2452.898496E-611.0199329
AAAGCGC2056.400647E-510.9755385
GCTAGAC2108.1762686E-510.71421633
GAGCCGA2108.1762686E-510.71421640