FastQCFastQC Report
Mon 6 Jun 2016
ERR1378262.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378262.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences811790
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG406.166299E-428.12365343
CGGGTAG507.1581875E-526.99870532
CGGTTCA702.70273E-522.4989229
TATCTCG600.00650837318.75025739
CGTATGC600.00651068818.74910244
CCGCCAC1102.2513723E-618.411614
CCGGGTA750.001110198117.99913831
AATGCCG750.001110198117.99913821
CGGCTAA1406.47251E-817.67772517
CCGGCTA1153.4477143E-617.60785316
GCGGTTC800.001710809116.8741918
CCGAGAC850.002565113815.88159225
GAACCCG1004.166679E-415.74924521
AAGAGCG1156.7706496E-515.6543164
CGGAAGA1056.0166215E-415.0057521
AGCGGTT900.0037492415.0020537
GAGCGGT900.0037492415.0020536
CCCGGCT1351.5811305E-514.99928115
GAATCGC1251.3802241E-414.39930912
TGCCGAG950.005375921714.209846523
Produced by FastQC (version 0.11.5)