Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378259.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1173001 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCTCGTA | 125 | 0.0 | 34.199413 | 41 |
TATCTCG | 150 | 0.0 | 28.50073 | 39 |
CGTATGC | 170 | 0.0 | 26.470137 | 44 |
CTCGTAT | 170 | 0.0 | 25.14663 | 42 |
ATCTCGT | 175 | 0.0 | 24.429193 | 40 |
GACCGCC | 185 | 0.0 | 24.323908 | 29 |
GAGACCG | 190 | 0.0 | 23.683807 | 27 |
AGACCGC | 190 | 0.0 | 23.683807 | 28 |
CCGAGAC | 200 | 0.0 | 23.624598 | 25 |
GAGCGGT | 205 | 0.0 | 23.050352 | 6 |
AGCGGTT | 205 | 0.0 | 23.04937 | 7 |
AGAGCGG | 215 | 0.0 | 23.024826 | 5 |
GCGGTTC | 215 | 0.0 | 23.022863 | 8 |
TCGTATG | 200 | 0.0 | 22.499617 | 43 |
AAGAGCG | 235 | 0.0 | 22.02278 | 4 |
CGGAAGA | 225 | 0.0 | 22.006191 | 1 |
CGGTTCA | 215 | 0.0 | 21.975431 | 9 |
ACCGCCT | 205 | 0.0 | 21.950844 | 30 |
GTATGCC | 250 | 0.0 | 19.799662 | 45 |
CCGCCTT | 260 | 0.0 | 17.307398 | 31 |