FastQCFastQC Report
Mon 6 Jun 2016
ERR1378259.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378259.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1173001
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA1250.034.19941341
TATCTCG1500.028.5007339
CGTATGC1700.026.47013744
CTCGTAT1700.025.1466342
ATCTCGT1750.024.42919340
GACCGCC1850.024.32390829
GAGACCG1900.023.68380727
AGACCGC1900.023.68380728
CCGAGAC2000.023.62459825
GAGCGGT2050.023.0503526
AGCGGTT2050.023.049377
AGAGCGG2150.023.0248265
GCGGTTC2150.023.0228638
TCGTATG2000.022.49961743
AAGAGCG2350.022.022784
CGGAAGA2250.022.0061911
CGGTTCA2150.021.9754319
ACCGCCT2050.021.95084430
GTATGCC2500.019.79966245
CCGCCTT2600.017.30739831