Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378258.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1283043 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGGTTC | 75 | 1.6985177E-6 | 23.999004 | 8 |
GTCGATC | 80 | 2.9762741E-6 | 22.499065 | 36 |
CGGTTCA | 85 | 5.0347753E-6 | 21.17559 | 9 |
GAAGTCG | 85 | 5.0347753E-6 | 21.17559 | 33 |
GACCGAA | 75 | 4.604642E-5 | 20.999128 | 29 |
CGTATGC | 90 | 8.255442E-6 | 19.99917 | 44 |
ATGCCGA | 90 | 8.255442E-6 | 19.99917 | 22 |
AATGCCG | 80 | 7.566288E-5 | 19.686684 | 21 |
CGGCGTG | 60 | 0.006493436 | 18.758724 | 1 |
AGACCGA | 85 | 1.2049638E-4 | 18.52864 | 28 |
AGCGGTT | 100 | 2.0469817E-5 | 17.999954 | 7 |
TCGTATG | 100 | 2.0476682E-5 | 17.999252 | 43 |
AGTCGAT | 100 | 2.0476682E-5 | 17.999252 | 35 |
GAGCGGT | 105 | 3.1098258E-5 | 17.144817 | 6 |
CTCGTAT | 105 | 3.1139898E-5 | 17.142145 | 42 |
TCTCGTA | 105 | 3.1139898E-5 | 17.142145 | 41 |
AAGTCGA | 105 | 3.1139898E-5 | 17.142145 | 34 |
ACCGAAG | 95 | 2.82057E-4 | 16.578259 | 30 |
CGGAAGA | 110 | 4.6197492E-5 | 16.37125 | 1 |
GAGACCG | 115 | 6.785894E-5 | 15.651524 | 27 |