FastQCFastQC Report
Mon 6 Jun 2016
ERR1378257.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378257.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1284103
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC654.8749826E-727.69175544
CTCGTAT551.3685094E-424.54496842
GACCGTC654.239174E-420.76881629
TCGTATG706.9850136E-419.28533243
GCGGTTC750.00111046817.9996418
TCTCGTA800.001711220616.87466441
AGCGGTT1104.6374385E-516.3639497
AATGCCG1056.0402375E-414.99911821
CGGTTCA900.003755711314.9991179
ATGCCGA900.003755711314.99911722
CGTATAA1553.6201545E-614.51527510
CCGAGAC1108.5931347E-414.3173425
AGACCGT950.00537717914.21024228
ACCGTCC950.00537717914.21024230
GCGCCCG950.005378568514.2096912
AGAGCGG1000.007548752213.5007835
CTTCGTA1851.5277146E-613.37863357
GAGCGGT1200.001655868713.1257616
ACGCCCA1902.0632087E-613.02554912
TCGTATA1751.2685157E-512.8563879