Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378257.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1284103 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTATGC | 65 | 4.8749826E-7 | 27.691755 | 44 |
CTCGTAT | 55 | 1.3685094E-4 | 24.544968 | 42 |
GACCGTC | 65 | 4.239174E-4 | 20.768816 | 29 |
TCGTATG | 70 | 6.9850136E-4 | 19.285332 | 43 |
GCGGTTC | 75 | 0.001110468 | 17.999641 | 8 |
TCTCGTA | 80 | 0.0017112206 | 16.874664 | 41 |
AGCGGTT | 110 | 4.6374385E-5 | 16.363949 | 7 |
AATGCCG | 105 | 6.0402375E-4 | 14.999118 | 21 |
CGGTTCA | 90 | 0.0037557113 | 14.999117 | 9 |
ATGCCGA | 90 | 0.0037557113 | 14.999117 | 22 |
CGTATAA | 155 | 3.6201545E-6 | 14.515275 | 10 |
CCGAGAC | 110 | 8.5931347E-4 | 14.31734 | 25 |
AGACCGT | 95 | 0.005377179 | 14.210242 | 28 |
ACCGTCC | 95 | 0.005377179 | 14.210242 | 30 |
GCGCCCG | 95 | 0.0053785685 | 14.20969 | 12 |
AGAGCGG | 100 | 0.0075487522 | 13.500783 | 5 |
CTTCGTA | 185 | 1.5277146E-6 | 13.3786335 | 7 |
GAGCGGT | 120 | 0.0016558687 | 13.125761 | 6 |
ACGCCCA | 190 | 2.0632087E-6 | 13.025549 | 12 |
TCGTATA | 175 | 1.2685157E-5 | 12.856387 | 9 |