FastQCFastQC Report
Mon 6 Jun 2016
ERR1378253.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378253.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1151388
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AATAGCG500.002265044522.4992613
CTGCGTC600.006510103618.750242
ACGCCCG851.2047465E-418.52880312
GCGGATC952.8200657E-416.57840310
CGGATCA850.002565730615.88183111
CGCCACT1602.9640796E-715.4682439
TGGGCGT900.003746074915.0047221
AACCCGG1654.2013562E-714.99950822
AGCGCTC1209.754902E-514.9995087
GGCGGAT900.003754744814.9995089
CCACGCC2253.0559022E-1014.99950810
CGCCCGG1351.5820466E-514.99950813
GAAAGCG950.00537254514.2119114
CCGGCTA1656.9117577E-613.63591716
ACCACGC2359.022187E-913.4038169
CACGCCC1709.405987E-613.23485911
AAAGCGC1902.0610714E-613.0264555
GAACCCG1751.2679067E-512.85672121
ACCCGGG1952.7594106E-612.69189223
CGGCTAA1607.824502E-512.65583517