Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378252.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2045008 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CACCGCG | 115 | 6.788055E-5 | 15.651792 | 8 |
ACCGCGC | 120 | 9.760098E-5 | 14.999634 | 9 |
CGTTGGA | 365 | 0.0 | 14.795244 | 5 |
CCTTCGT | 325 | 0.0 | 14.542728 | 1 |
TTCGTTG | 385 | 0.0 | 14.028375 | 3 |
ACGGGAT | 245 | 1.0968506E-9 | 13.775174 | 13 |
TCGTTGG | 380 | 0.0 | 13.620419 | 4 |
AAAGCGC | 310 | 1.6370905E-11 | 13.065154 | 5 |
CTTCGTT | 350 | 0.0 | 12.8593445 | 2 |
CGGGATT | 265 | 3.5433914E-9 | 12.735538 | 14 |
AAGCGCT | 335 | 6.366463E-11 | 12.090143 | 6 |
TGAGCCG | 440 | 0.0 | 11.761364 | 45 |
AGCGCTC | 195 | 3.8469057E-5 | 11.538462 | 7 |
AAACGGG | 465 | 0.0 | 11.12876 | 11 |
CTCCGTC | 230 | 1.7346298E-5 | 10.761396 | 5 |
GAAACGG | 440 | 5.456968E-12 | 10.738373 | 10 |
GACTCCG | 190 | 3.863569E-4 | 10.659719 | 3 |
GCGCTCC | 215 | 1.03872764E-4 | 10.46486 | 8 |
GTAGTCC | 495 | 0.0 | 10.45429 | 22 |
GCCACCG | 280 | 1.2575765E-6 | 10.446939 | 6 |