FastQCFastQC Report
Mon 6 Jun 2016
ERR1378252.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378252.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2045008
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACCGCG1156.788055E-515.6517928
ACCGCGC1209.760098E-514.9996349
CGTTGGA3650.014.7952445
CCTTCGT3250.014.5427281
TTCGTTG3850.014.0283753
ACGGGAT2451.0968506E-913.77517413
TCGTTGG3800.013.6204194
AAAGCGC3101.6370905E-1113.0651545
CTTCGTT3500.012.85934452
CGGGATT2653.5433914E-912.73553814
AAGCGCT3356.366463E-1112.0901436
TGAGCCG4400.011.76136445
AGCGCTC1953.8469057E-511.5384627
AAACGGG4650.011.1287611
CTCCGTC2301.7346298E-510.7613965
GAAACGG4405.456968E-1210.73837310
GACTCCG1903.863569E-410.6597193
GCGCTCC2151.03872764E-410.464868
GTAGTCC4950.010.4542922
GCCACCG2801.2575765E-610.4469396