FastQCFastQC Report
Mon 6 Jun 2016
ERR1378251.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378251.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1492779
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCACGT207.03559E-444.9978923
CGTATGC653.6743586E-1034.6137644
CTCGTAT1003.6479832E-822.49894542
TCTCGTA1201.10649125E-820.62403341
CGGTTCA1302.7765054E-819.0369329
TCGTATG1202.4991277E-718.7491243
GCGGTTC1459.674659E-817.0687378
GAGCGGT1601.612716E-816.8764696
AGCGGTT1501.4232319E-716.5003347
CGTGGTA1451.8104911E-615.51651332
CCGAGAC1602.9662806E-715.46802525
AATGCCG1602.9674084E-715.46750621
AGACCGT1502.5760037E-614.99929728
TCGTATA1209.761946E-514.9987949
ATCTCGT1553.6194015E-614.51593440
AAGAGCG1801.118E-613.7553454
CTTCGTA1709.405303E-613.235567
ACCGTGG1709.411804E-613.234673530
CGGAAGA2053.3436663E-713.1776171
ACCACGC3600.013.1239449
Produced by FastQC (version 0.11.5)