Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378250.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1136112 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCGGTA | 40 | 3.458863E-7 | 39.374 | 32 |
TCTCGTA | 40 | 1.5608222E-5 | 33.749146 | 41 |
CTCGTAT | 45 | 3.4914156E-5 | 29.999235 | 42 |
GCGGTTC | 45 | 3.4914156E-5 | 29.999235 | 8 |
CGTATGC | 55 | 1.3684251E-4 | 24.54483 | 44 |
CGGTAAA | 80 | 2.9753592E-6 | 22.49943 | 34 |
GCGGTAA | 60 | 2.467909E-4 | 22.499428 | 33 |
GACCGCG | 60 | 2.467909E-4 | 22.499428 | 29 |
CCGAGAC | 60 | 2.467909E-4 | 22.499428 | 25 |
CCGCGGT | 75 | 4.603475E-5 | 20.999466 | 31 |
ACCGCGG | 65 | 4.238916E-4 | 20.768703 | 30 |
TCCGAAC | 55 | 0.00393709 | 20.454025 | 32 |
ATCTCGT | 95 | 1.3160985E-5 | 18.946886 | 40 |
ATCTTCG | 150 | 7.2595867E-9 | 18.001125 | 5 |
CTTCGTA | 125 | 3.8341568E-7 | 17.999544 | 7 |
AGCGGTT | 80 | 0.0017111191 | 16.874573 | 7 |
TCGTATG | 80 | 0.0017111191 | 16.874573 | 43 |
TTCGTAT | 135 | 8.584466E-7 | 16.666243 | 8 |
ATGCCGA | 95 | 2.8198663E-4 | 16.578526 | 22 |
GAGCGGT | 90 | 0.0037523233 | 15.000938 | 6 |